Abstract: Bioturbation increases time averaging of young and old shells within the entire mixed layer and accelerating the burial of shells into a sequestration zone. Bioirrigation by oxygenated pore-water promotes carbonate dissolution in the TAZ, and biomixing itself can mill shells weakened by dissolution or microbial maceration, and/or expose them to damage at the sediment–water interface. We fit transition rate matrices to bivalve age–frequency distributions from four sediment cores to assess the competing effects of bioturbation on disintegration and time averaging. Disintegration covaries positively with mixing at all four sites. Mixing and disintegration rates decline abruptly at the base of the 20- to 40-cm-thick, age-homogenized surface mixed layer at the three well-bioturbated sites. In contrast, they are very low in the upper 25 cm at an effluent site with legacy sediment toxicity. Assemblages formed during maximum wastewater emissions vary strongly in time averaging. Thus, even though disintegration rates covary positively with mixing rates, reducing postmortem shell survival, bioturbation has the net effect of increasing the time averaging of skeletal remains on this warm-temperate siliciclastic shelf.